/cemt/A83592_2_lane_gembs/HGCV2CCXY_5_1

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SAMPLE A83592_2_lane_gembs LANE HGCV2CCXY_5_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 143594534 100.00 % 71797267 100.00 % 71797267 100.00 %
General Reads 141467880 98.52 % 71168411 99.12 % 70299469 97.91 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 589255 0.41 % 296004 0.41 % 293251 0.41 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 1537399 1.07 % 332852 0.46 % 1204547 1.68 %
Bisulfite_reads C2T 72277519 50.33 % 36343890 50.62 % 35933629 50.05 %
Bisulfite_reads G2A 69779616 48.59 % 35120525 48.92 % 34659091 48.27 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 62062713
Average Unique 86.44 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 8493087981 39.17 % 3578934275 33.01 % 4914153706 45.33 %
Base Counts Overall C 2268868842 10.46 % 90684202 0.84 % 2178184640 20.09 %
Base Counts Overall G 2283340985 10.53 % 2179821794 20.11 % 103519191 0.95 %
Base Counts Overall T 8492326321 39.17 % 4919785112 45.38 % 3572541209 32.95 %
Base Counts Overall N 145150505 0.67 % 72161934 0.67 % 72988571 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9947836820421675
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 68852130



Mapping Quality

Mapping Quality Histogram
HGCV2CCXY_5_1.mapq.png



Read Length

Read Length Reads
150 71797267
150 71797267



Insert Size Plot

Insert Size Histogram
HGCV2CCXY_5_1.isize.png