/cemt/mapping_coverage/A83592_2_lane_gembs
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SAMPLE A83592_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
905173895 |
100% |
118084252646 |
100% |
| Mapped |
897344258 |
99.14 % |
116909807096 |
99.01 % |
| Passed |
734683397 |
81.16 % |
92510677946 |
78.34 % |
| NotPassed |
162660861 |
17.97 % |
24399129150 |
20.66 % |
| |
|
|
|
|
| LowMAPQ |
95894822 |
10.59 % |
14384223300 |
12.18 % |
| MateUnmapped |
7829637 |
0.86 % |
1174445550 |
0.99 % |
| Duplicate |
53985040 |
5.96 % |
8097756000 |
6.86 % |
| BadOrientation |
60 |
0.00 % |
9000 |
0.00 % |
| LargeInsertSize |
10812 |
0.00 % |
1621800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12770127 |
1.41 % |
1915519050 |
1.62 % |
| Unmapped |
7829637 |
0.86 % |
1174445550 |
0.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
110194804350 |
100% |
| Passed |
86469184317 |
78.47 % |
| Trimmed |
3164543548 |
2.87 % |
| Clipped |
261374921 |
0.24 % |
| Overlapping |
17422751483 |
15.81 % |
| LowQuality |
2876950081 |
2.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |