/cemt/methylation/A83592_2_lane_gembs

BACK

SAMPLE A83592_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27088206 21142518 78.05 %
NonRefCpG 278895 184725 66.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A83592_2_lane_gembs_coverage_refCpG.png ./IMG//A83592_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A83592_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A83592_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A83592_2_lane_gembs_quality_refcpg.png ./IMG//A83592_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A83592_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4832034 9.10 % 1997902 4.47 % 58353 11.05 % 17397 4.31 %
Intermediate (0.3-0.7) 10258243 19.31 % 7343644 16.42 % 104818 19.85 % 63857 15.81 %
Methylated (0.7-1) 38031794 71.59 % 35368880 79.11 % 364980 69.11 % 322651 79.88 %
Median Methylation 0.850 0.870 0.840 0.870