/cemt/A83593_2_lane_gembs

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SAMPLE A83593_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1144022620 100.00 % 572011310 100.00 % 572011310 100.00 %
General Reads 1002845501 87.66 % 505002375 88.29 % 497843126 87.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 174723 0.02 % 87769 0.02 % 86954 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 141002396 12.33 % 66921166 11.70 % 74081230 12.95 %
Bisulfite_reads C2T 510832011 44.65 % 257100763 44.95 % 253731248 44.36 %
Bisulfite_reads G2A 492188213 43.02 % 247989381 43.35 % 244198832 42.69 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 431678018
Average Unique 75.47 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 64976995566 37.61 % 28828567193 33.38 % 36148428373 41.85 %
Base Counts Overall C 20567630746 11.91 % 2862491765 3.31 % 17705138981 20.50 %
Base Counts Overall G 20759417672 12.02 % 17715670292 20.51 % 3043747380 3.52 %
Base Counts Overall T 65275628657 37.79 % 36388130627 42.13 % 28887498030 33.44 %
Base Counts Overall N 1167742979 0.68 % 578847933 0.67 % 588895046 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.7835860157550016
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 482292676



Mapping Quality

Mapping Quality Histogram
A83593_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A83593_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGCV2CCXY_5_1
HFJM5CCXY_3_1