/cemt/mapping_coverage/A83593_2_lane_gembs
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SAMPLE A83593_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
944772673 |
100% |
123069838070 |
100% |
| Mapped |
935084302 |
98.97 % |
121616582420 |
98.82 % |
| Passed |
750521377 |
79.44 % |
93932143670 |
76.32 % |
| NotPassed |
184562925 |
19.54 % |
27684438750 |
22.49 % |
| |
|
|
|
|
| LowMAPQ |
110583280 |
11.70 % |
16587492000 |
13.48 % |
| MateUnmapped |
9688371 |
1.03 % |
1453255650 |
1.18 % |
| Duplicate |
58170407 |
6.16 % |
8725561050 |
7.09 % |
| BadOrientation |
96 |
0.00 % |
14400 |
0.00 % |
| LargeInsertSize |
20300 |
0.00 % |
3045000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15788842 |
1.67 % |
2368326300 |
1.92 % |
| Unmapped |
9688371 |
1.03 % |
1453255650 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
112568915550 |
100% |
| Passed |
87641099968 |
77.86 % |
| Trimmed |
3229683649 |
2.87 % |
| Clipped |
339394855 |
0.30 % |
| Overlapping |
18297377025 |
16.25 % |
| LowQuality |
3061360053 |
2.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |