/cemt/methylation/A83593_2_lane_gembs

BACK

SAMPLE A83593_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27076301 20851282 77.01 %
NonRefCpG 281683 181066 64.28 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A83593_2_lane_gembs_coverage_refCpG.png ./IMG//A83593_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A83593_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A83593_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A83593_2_lane_gembs_quality_refcpg.png ./IMG//A83593_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A83593_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5469181 10.31 % 2343404 5.32 % 68288 12.82 % 22009 5.52 %
Intermediate (0.3-0.7) 9176222 17.30 % 6256953 14.19 % 98479 18.48 % 55613 13.94 %
Methylated (0.7-1) 38392955 72.39 % 35489854 80.49 % 366106 68.70 % 321214 80.54 %
Median Methylation 0.870 0.890 0.850 0.900