/EXTERNAL CREST/K006464_1_lane_gembs/JKU010.Bisulfite-Seq.DNA_Methylation.JGAX00000016033.JKU010_WGBS
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1990083520 | 100.00 % | 995041760 | 100.00 % | 995041760 | 100.00 % |
| General Reads | 1902623793 | 95.61 % | 965182197 | 97.00 % | 937441596 | 94.21 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12301183 | 0.62 % | 6078074 | 0.61 % | 6223109 | 0.63 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 75158544 | 3.78 % | 23781489 | 2.39 % | 51377055 | 5.16 % |
| Bisulfite_reads C2T | 975532248 | 49.02 % | 495066531 | 49.75 % | 480465717 | 48.29 % |
| Bisulfite_reads G2A | 939392728 | 47.20 % | 476193740 | 47.86 % | 463198988 | 46.55 % |
| Concept | Value |
|---|---|
| Unique Fragments | 422559792 |
| Average Unique | 42.47 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 75198525627 | 37.05 % | 45383562441 | 44.72 % | 29814963186 | 29.38 % |
| Base Counts Overall C | 26624737302 | 13.12 % | 22767849441 | 22.43 % | 3856887861 | 3.80 % |
| Base Counts Overall G | 27128873944 | 13.36 % | 2808786429 | 2.77 % | 24320087515 | 23.96 % |
| Base Counts Overall T | 72016090385 | 35.48 % | 29525414210 | 29.09 % | 42490676175 | 41.87 % |
| Base Counts Overall N | 2020291782 | 1.00 % | 1008646999 | 0.99 % | 1011644783 | 1.00 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9825516835444809 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 563109034 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 995041760 |
| 101 | 995041760 |
| Insert Size Histogram |
|---|
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