/EXTERNAL CREST/mapping_coverage/K006464_1_lane_gembs
BACK
SAMPLE K006464_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1823136346 |
100% |
172404843276 |
100% |
| Mapped |
1767061109 |
96.92 % |
166741244339 |
96.71 % |
| Passed |
688529909 |
37.77 % |
57809593139 |
33.53 % |
| NotPassed |
1078531200 |
59.16 % |
108931651200 |
63.18 % |
| |
|
|
|
|
| LowMAPQ |
463567538 |
25.43 % |
46820321338 |
27.16 % |
| MateUnmapped |
56075237 |
3.08 % |
5663598937 |
3.29 % |
| Duplicate |
80146356 |
4.40 % |
8094781956 |
4.70 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
262242 |
0.01 % |
26486442 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
534555064 |
29.32 % |
53990061464 |
31.32 % |
| Unmapped |
56075237 |
3.08 % |
5663598937 |
3.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
69495016975 |
100% |
| Passed |
53960736543 |
77.65 % |
| Trimmed |
2789086728 |
4.01 % |
| Clipped |
2010633154 |
2.89 % |
| Overlapping |
9674790682 |
13.92 % |
| LowQuality |
1059769868 |
1.52 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |