/EXTERNAL CREST/methylation/K006464_1_lane_gembs

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SAMPLE K006464_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25595053 15538342 60.71 %
NonRefCpG 441490 63635 14.41 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006464_1_lane_gembs_coverage_refCpG.png ./IMG//K006464_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006464_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006464_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006464_1_lane_gembs_quality_refcpg.png ./IMG//K006464_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006464_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8691695 17.84 % 4986328 13.96 % 325112 42.26 % 56011 22.31 %
Intermediate (0.3-0.7) 11953627 24.53 % 7359694 20.60 % 217669 28.29 % 68396 27.24 %
Methylated (0.7-1) 28076622 57.63 % 23381410 65.44 % 226538 29.45 % 126637 50.44 %
Median Methylation 0.760 0.810 0.410 0.700