/EXTERNAL CREST/mapping_coverage/K006465_1_lane_gembs
BACK
SAMPLE K006465_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2620197055 |
100% |
194594979341 |
100% |
| Mapped |
2620197055 |
100.00 % |
194594979341 |
100.00 % |
| Passed |
1399009530 |
53.39 % |
152406669000 |
78.32 % |
| NotPassed |
1221187525 |
46.61 % |
42188310341 |
21.68 % |
| |
|
|
|
|
| LowMAPQ |
409673489 |
15.64 % |
42188310341 |
21.68 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
811514036 |
30.97 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72572296789 |
100% |
| Passed |
66264684768 |
91.31 % |
| Trimmed |
3183622180 |
4.39 % |
| Clipped |
2328625970 |
3.21 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
795363871 |
1.10 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |