/EXTERNAL CREST/methylation/K006465_1_lane_gembs

BACK

SAMPLE K006465_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26239352 20299002 77.36 %
NonRefCpG 309007 147120 47.61 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006465_1_lane_gembs_coverage_refCpG.png ./IMG//K006465_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006465_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006465_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006465_1_lane_gembs_quality_refcpg.png ./IMG//K006465_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006465_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8608895 16.71 % 7042329 16.19 % 124559 21.93 % 44726 12.41 %
Intermediate (0.3-0.7) 10626132 20.62 % 8108448 18.64 % 135520 23.86 % 74509 20.68 %
Methylated (0.7-1) 32295210 62.67 % 28355499 65.18 % 307787 54.20 % 241088 66.91 %
Median Methylation 0.800 0.820 0.740 0.820