/EXTERNAL KNIH/K006233_1_lane_gembs

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SAMPLE K006233_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1939412472 100.00 % 969706236 100.00 % 969706236 100.00 %
General Reads 1895829223 97.75 % 953637197 98.34 % 942192026 97.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12444198 0.64 % 6283618 0.65 % 6160580 0.64 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31139051 1.61 % 9785421 1.01 % 21353630 2.20 %
Bisulfite_reads C2T 971221833 50.08 % 488426035 50.37 % 482795798 49.79 %
Bisulfite_reads G2A 937051588 48.32 % 471494780 48.62 % 465556808 48.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 618678238
Average Unique 63.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 106011526863 35.96 % 41137973515 27.91 % 64873553348 44.01 %
Base Counts Overall C 40175423393 13.63 % 5427524623 3.68 % 34747898770 23.57 %
Base Counts Overall G 42690933711 14.48 % 35530720425 24.11 % 7160213286 4.86 %
Base Counts Overall T 103910477851 35.25 % 64308938279 43.63 % 39601539572 26.87 %
Base Counts Overall N 2002333926 0.68 % 990191030 0.67 % 1012142896 0.69 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9723547518059592
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 707128209



Mapping Quality

Mapping Quality Histogram
K006233_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006233_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140010.Bisulfite-Seq.DNA_Methylation.EGAX00001529771.DB31_N