/EXTERNAL KNIH/mapping_coverage/K006233_1_lane_gembs
BACK
SAMPLE K006233_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1600949116 |
100% |
219707051116 |
100% |
| Mapped |
1581533755 |
98.79 % |
216775331605 |
98.67 % |
| Passed |
634370487 |
39.62 % |
73753678137 |
33.57 % |
| NotPassed |
947163268 |
59.16 % |
143021653468 |
65.10 % |
| |
|
|
|
|
| LowMAPQ |
595838228 |
37.22 % |
89971572428 |
40.95 % |
| MateUnmapped |
19415361 |
1.21 % |
2931719511 |
1.33 % |
| Duplicate |
302803158 |
18.91 % |
45723276858 |
20.81 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
186454 |
0.01 % |
28154554 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
48335428 |
3.02 % |
7298649628 |
3.32 % |
| Unmapped |
19415361 |
1.21 % |
2931719511 |
1.33 % |
Base Level Counts
| Bases |
# |
% |
| Total |
95597324766 |
100% |
| Passed |
69334479777 |
72.53 % |
| Trimmed |
2591848514 |
2.71 % |
| Clipped |
1246033004 |
1.30 % |
| Overlapping |
20597613625 |
21.55 % |
| LowQuality |
1827349846 |
1.91 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |