/EXTERNAL KNIH/K006234_1_lane_gembs

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SAMPLE K006234_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1601170900 100.00 % 800585450 100.00 % 800585450 100.00 %
General Reads 1568834018 97.98 % 787196588 98.33 % 781637430 97.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11872441 0.74 % 5982577 0.75 % 5889864 0.74 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20464441 1.28 % 7406285 0.93 % 13058156 1.63 %
Bisulfite_reads C2T 808294217 50.48 % 405566904 50.66 % 402727313 50.30 %
Bisulfite_reads G2A 772412242 48.24 % 387612261 48.42 % 384799981 48.06 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 526238903
Average Unique 65.73 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 87541868546 35.97 % 34034787985 27.97 % 53507080561 43.97 %
Base Counts Overall C 33139906602 13.62 % 4895616962 4.02 % 28244289640 23.21 %
Base Counts Overall G 35209303095 14.47 % 29004829761 23.84 % 6204473334 5.10 %
Base Counts Overall T 85707914909 35.22 % 52886733369 43.46 % 32821181540 26.97 %
Base Counts Overall N 1778983648 0.73 % 867020323 0.71 % 911963325 0.75 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9731823448411911
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 609019985



Mapping Quality

Mapping Quality Histogram
K006234_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006234_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140010.Bisulfite-Seq.DNA_Methylation.EGAX00001529778.OB56_N