/EXTERNAL KNIH/methylation/K006234_1_lane_gembs

BACK

SAMPLE K006234_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26666145 21809842 81.79 %
NonRefCpG 371241 182720 49.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006234_1_lane_gembs_coverage_refCpG.png ./IMG//K006234_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006234_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006234_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006234_1_lane_gembs_quality_refcpg.png ./IMG//K006234_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006234_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6942224 13.40 % 5722486 12.41 % 139704 20.84 % 43604 9.90 %
Intermediate (0.3-0.7) 10439610 20.15 % 8305746 18.01 % 161767 24.13 % 91786 20.84 %
Methylated (0.7-1) 34430815 66.45 % 32077672 69.57 % 368977 55.03 % 305082 69.26 %
Median Methylation 0.820 0.830 0.740 0.830