/EXTERNAL KNIH/K006235_1_lane_gembs

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SAMPLE K006235_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1756838218 100.00 % 878419109 100.00 % 878419109 100.00 %
General Reads 1718747865 97.83 % 864287935 98.39 % 854459930 97.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11141980 0.63 % 5624146 0.64 % 5517834 0.63 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26948373 1.53 % 8507028 0.97 % 18441345 2.10 %
Bisulfite_reads C2T 881983423 50.20 % 443471680 50.49 % 438511743 49.92 %
Bisulfite_reads G2A 847906422 48.26 % 426440401 48.55 % 421466021 47.98 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 571113858
Average Unique 65.02 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 96018320959 35.96 % 37346094132 27.97 % 58672226827 43.94 %
Base Counts Overall C 36261237913 13.58 % 4978611165 3.73 % 31282626748 23.43 %
Base Counts Overall G 38606402846 14.46 % 32075471282 24.02 % 6530931564 4.89 %
Base Counts Overall T 94334035928 35.33 % 58212900341 43.60 % 36121135587 27.05 %
Base Counts Overall N 1819411490 0.68 % 906627648 0.68 % 912783842 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9713305027384621
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 659024033



Mapping Quality

Mapping Quality Histogram
K006235_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006235_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140011.Bisulfite-Seq.DNA_Methylation.EGAX00001529779.OB57_D