/EXTERNAL KNIH/K006236_1_lane_gembs

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SAMPLE K006236_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1655327320 100.00 % 827663660 100.00 % 827663660 100.00 %
General Reads 1620912454 97.92 % 814794018 98.45 % 806118436 97.40 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10553128 0.64 % 5327743 0.64 % 5225385 0.63 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23861738 1.44 % 7541899 0.91 % 16319839 1.97 %
Bisulfite_reads C2T 830333715 50.16 % 417363032 50.43 % 412970683 49.90 %
Bisulfite_reads G2A 801131867 48.40 % 402758729 48.66 % 398373138 48.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 550070918
Average Unique 66.46 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 90851471860 36.11 % 35310237805 28.07 % 55541234055 44.15 %
Base Counts Overall C 33923691420 13.48 % 4409074060 3.50 % 29514617360 23.46 %
Base Counts Overall G 35878674113 14.26 % 30058548456 23.89 % 5820125657 4.63 %
Base Counts Overall T 89264704372 35.48 % 55189984448 43.87 % 34074719924 27.09 %
Base Counts Overall N 1691210875 0.67 % 837031551 0.67 % 854179324 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9736226135057786
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 630382769



Mapping Quality

Mapping Quality Histogram
K006236_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006236_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140012.Bisulfite-Seq.DNA_Methylation.EGAX00001529767.CKD23_C