/EXTERNAL KNIH/mapping_coverage/K006236_1_lane_gembs
BACK
SAMPLE K006236_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1400391583 |
100% |
190818298938 |
100% |
| Mapped |
1385685976 |
98.95 % |
188597752281 |
98.84 % |
| Passed |
649758663 |
46.40 % |
77472728018 |
40.60 % |
| NotPassed |
735927313 |
52.55 % |
111125024263 |
58.24 % |
| |
|
|
|
|
| LowMAPQ |
467696758 |
33.40 % |
70622210458 |
37.01 % |
| MateUnmapped |
14705607 |
1.05 % |
2220546657 |
1.16 % |
| Duplicate |
225112170 |
16.07 % |
33991937670 |
17.81 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
346518 |
0.02 % |
52324218 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
42771867 |
3.05 % |
6458551917 |
3.38 % |
| Unmapped |
14705607 |
1.05 % |
2220546657 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
97984669949 |
100% |
| Passed |
72707594456 |
74.20 % |
| Trimmed |
2697412308 |
2.75 % |
| Clipped |
1072674278 |
1.09 % |
| Overlapping |
19439267653 |
19.84 % |
| LowQuality |
2067721254 |
2.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |