/EXTERNAL KNIH/methylation/K006236_1_lane_gembs

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SAMPLE K006236_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26728221 22422373 83.89 %
NonRefCpG 379900 189758 49.95 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006236_1_lane_gembs_coverage_refCpG.png ./IMG//K006236_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006236_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006236_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006236_1_lane_gembs_quality_refcpg.png ./IMG//K006236_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006236_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6208960 11.98 % 5186830 11.11 % 136862 20.08 % 39481 8.79 %
Intermediate (0.3-0.7) 8194232 15.81 % 6463927 13.84 % 141874 20.82 % 74199 16.53 %
Methylated (0.7-1) 37413703 72.20 % 35041378 75.05 % 402846 59.10 % 335329 74.68 %
Median Methylation 0.860 0.870 0.790 0.870