/EXTERNAL KNIH/K006237_1_lane_gembs/KEP20140013.Bisulfite-Seq.DNA_Methylation.EGAX00001529768.CKD24_C

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SAMPLE K006237_1_lane_gembs LANE KEP20140013.Bisulfite-Seq.DNA_Methylation.EGAX00001529768.CKD24_C

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1678163764 100.00 % 839081882 100.00 % 839081882 100.00 %
General Reads 1641287213 97.80 % 825893204 98.43 % 815394009 97.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11785538 0.70 % 5955941 0.71 % 5829597 0.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25091013 1.50 % 7232737 0.86 % 17858276 2.13 %
Bisulfite_reads C2T 844975104 50.35 % 425134004 50.67 % 419841100 50.04 %
Bisulfite_reads G2A 808097647 48.15 % 406715141 48.47 % 401382506 47.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 555280491
Average Unique 66.18 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 92364542308 36.21 % 35843171924 28.10 % 56521370384 44.32 %
Base Counts Overall C 34102587901 13.37 % 4285449621 3.36 % 29817138280 23.38 %
Base Counts Overall G 36006478285 14.12 % 30348135668 23.79 % 5658342617 4.44 %
Base Counts Overall T 90896730469 35.63 % 56211496901 44.07 % 34685233568 27.20 %
Base Counts Overall N 1710553165 0.67 % 852191950 0.67 % 858361215 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9722860786270141
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 638015934



Mapping Quality

Mapping Quality Histogram
KEP20140013.Bisulfite-Seq.DNA_Methylation.EGAX00001529768.CKD24_C.mapq.png



Read Length

Read Length Reads
151 839081882
151 839081882



Insert Size Plot

Insert Size Histogram
KEP20140013.Bisulfite-Seq.DNA_Methylation.EGAX00001529768.CKD24_C.isize.png