/EXTERNAL KNIH/mapping_coverage/K006237_1_lane_gembs
BACK
SAMPLE K006237_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1433593952 |
100% |
194726682563 |
100% |
| Mapped |
1417081493 |
98.85 % |
192233301254 |
98.72 % |
| Passed |
685189281 |
47.80 % |
81717577242 |
41.97 % |
| NotPassed |
731892212 |
51.05 % |
110515724012 |
56.75 % |
| |
|
|
|
|
| LowMAPQ |
472485124 |
32.96 % |
71345253724 |
36.64 % |
| MateUnmapped |
16512459 |
1.15 % |
2493381309 |
1.28 % |
| Duplicate |
211981838 |
14.79 % |
32009257538 |
16.44 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
285516 |
0.02 % |
43112916 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
47139734 |
3.29 % |
7118099834 |
3.66 % |
| Unmapped |
16512459 |
1.15 % |
2493381309 |
1.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
103343632467 |
100% |
| Passed |
76505866077 |
74.03 % |
| Trimmed |
2820246755 |
2.73 % |
| Clipped |
1099559018 |
1.06 % |
| Overlapping |
20526496207 |
19.86 % |
| LowQuality |
2391464410 |
2.31 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |