/EXTERNAL KNIH/methylation/K006237_1_lane_gembs

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SAMPLE K006237_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26853052 22740717 84.69 %
NonRefCpG 373166 197339 52.88 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006237_1_lane_gembs_coverage_refCpG.png ./IMG//K006237_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006237_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006237_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006237_1_lane_gembs_quality_refcpg.png ./IMG//K006237_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006237_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6340461 12.14 % 5325598 11.26 % 127380 18.87 % 38475 8.37 %
Intermediate (0.3-0.7) 7842064 15.02 % 6222859 13.16 % 135858 20.12 % 73228 15.92 %
Methylated (0.7-1) 38030327 72.84 % 35752399 75.59 % 411841 61.01 % 348217 75.71 %
Median Methylation 0.870 0.880 0.800 0.870