/EXTERNAL KNIH/K006239_1_lane_gembs

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SAMPLE K006239_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1743474348 100.00 % 871737174 100.00 % 871737174 100.00 %
General Reads 1700911230 97.56 % 856522135 98.25 % 844389095 96.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12003463 0.69 % 6071406 0.70 % 5932057 0.68 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30559655 1.75 % 9143633 1.05 % 21416022 2.46 %
Bisulfite_reads C2T 872918099 50.07 % 439515095 50.42 % 433403004 49.72 %
Bisulfite_reads G2A 839996594 48.18 % 423078446 48.53 % 416918148 47.83 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 559598891
Average Unique 64.19 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 95067293895 35.87 % 36957142681 27.89 % 58110151214 43.86 %
Base Counts Overall C 36147273338 13.64 % 4910679119 3.71 % 31236594219 23.57 %
Base Counts Overall G 38295052877 14.45 % 31869179984 24.05 % 6425872893 4.85 %
Base Counts Overall T 93594324704 35.32 % 57837146594 43.65 % 35757178110 26.99 %
Base Counts Overall N 1904156082 0.72 % 929902070 0.70 % 974254012 0.74 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9711965704748583
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 642886930



Mapping Quality

Mapping Quality Histogram
K006239_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006239_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140015.Bisulfite-Seq.DNA_Methylation.EGAX00001529770.CKD27_C