/EXTERNAL KNIH/K006239_1_lane_gembs/KEP20140015.Bisulfite-Seq.DNA_Methylation.EGAX00001529770.CKD27_C

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SAMPLE K006239_1_lane_gembs LANE KEP20140015.Bisulfite-Seq.DNA_Methylation.EGAX00001529770.CKD27_C

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1743474348	100.00 %	871737174	100.00 %	871737174	100.00 %
General Reads	1700911230	97.56 %	856522135	98.25 %	844389095	96.86 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	12003463	0.69 %	6071406	0.70 %	5932057	0.68 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	30559655	1.75 %	9143633	1.05 %	21416022	2.46 %
Bisulfite_reads C2T	872918099	50.07 %	439515095	50.42 %	433403004	49.72 %
Bisulfite_reads G2A	839996594	48.18 %	423078446	48.53 %	416918148	47.83 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	559598891
Average Unique	64.19 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	95067293895	35.87 %	36957142681	27.89 %	58110151214	43.86 %
Base Counts Overall C	36147273338	13.64 %	4910679119	3.71 %	31236594219	23.57 %
Base Counts Overall G	38295052877	14.45 %	31869179984	24.05 %	6425872893	4.85 %
Base Counts Overall T	93594324704	35.32 %	57837146594	43.65 %	35757178110	26.99 %
Base Counts Overall N	1904156082	0.72 %	929902070	0.70 %	974254012	0.74 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9711965704748583
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	642886930

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
151	871737174
151	871737174

Insert Size Plot

Insert Size Histogram