/EXTERNAL KNIH/mapping_coverage/K006239_1_lane_gembs
BACK
SAMPLE K006239_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1477594404 |
100% |
201132852785 |
100% |
| Mapped |
1458269613 |
98.69 % |
198214809344 |
98.55 % |
| Passed |
661606216 |
44.78 % |
77918636397 |
38.74 % |
| NotPassed |
796663397 |
53.92 % |
120296172947 |
59.81 % |
| |
|
|
|
|
| LowMAPQ |
519702162 |
35.17 % |
78475026462 |
39.02 % |
| MateUnmapped |
19324791 |
1.31 % |
2918043441 |
1.45 % |
| Duplicate |
228799534 |
15.48 % |
34548729634 |
17.18 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
259932 |
0.02 % |
39249732 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
47901769 |
3.24 % |
7233167119 |
3.60 % |
| Unmapped |
19324791 |
1.31 % |
2918043441 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99758572347 |
100% |
| Passed |
73114799043 |
73.29 % |
| Trimmed |
2720922927 |
2.73 % |
| Clipped |
1201234603 |
1.20 % |
| Overlapping |
20638701347 |
20.69 % |
| LowQuality |
2082914427 |
2.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |