/EXTERNAL KNIH/methylation/K006239_1_lane_gembs

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SAMPLE K006239_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26786566 21926907 81.86 %
NonRefCpG 387119 186465 48.17 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006239_1_lane_gembs_coverage_refCpG.png ./IMG//K006239_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006239_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006239_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006239_1_lane_gembs_quality_refcpg.png ./IMG//K006239_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006239_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7102226 13.70 % 5872607 12.76 % 150080 21.58 % 44966 10.05 %
Intermediate (0.3-0.7) 9109860 17.57 % 7076776 15.37 % 156564 22.51 % 83128 18.58 %
Methylated (0.7-1) 35635065 68.73 % 33087982 71.87 % 388896 55.91 % 319419 71.38 %
Median Methylation 0.840 0.850 0.750 0.850