/EXTERNAL KNIH/K006240_1_lane_gembs

BACK

SAMPLE K006240_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1359422770 100.00 % 679711385 100.00 % 679711385 100.00 %
General Reads 1316755101 96.86 % 662081556 97.41 % 654673545 96.32 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 12499232 0.92 % 6450433 0.95 % 6048799 0.89 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30168437 2.22 % 11179396 1.64 % 18989041 2.79 %
Bisulfite_reads C2T 677161765 49.81 % 340501256 50.09 % 336660509 49.53 %
Bisulfite_reads G2A 652092568 47.97 % 328030733 48.26 % 324061835 47.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 430115538
Average Unique 63.28 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74107899136 35.86 % 28939724852 28.01 % 45168174284 43.72 %
Base Counts Overall C 28531856774 13.81 % 4361340432 4.22 % 24170516342 23.39 %
Base Counts Overall G 30063543207 14.55 % 24567824800 23.78 % 5495718407 5.32 %
Base Counts Overall T 72534460477 35.10 % 44753759692 43.32 % 27780700785 26.89 %
Base Counts Overall N 1394501446 0.67 % 693480744 0.67 % 701020702 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9584213694512097
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 489059108



Mapping Quality

Mapping Quality Histogram
K006240_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006240_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20150001.Bisulfite-Seq.DNA_Methylation.EGAX00001529772.IPS01_N