/EXTERNAL KNIH/mapping_coverage/K006240_1_lane_gembs
BACK
SAMPLE K006240_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1179451559 |
100% |
157924566098 |
100% |
| Mapped |
1165162868 |
98.79 % |
155766973757 |
98.63 % |
| Passed |
576666469 |
48.89 % |
66904017508 |
42.36 % |
| NotPassed |
588496399 |
49.90 % |
88862956249 |
56.27 % |
| |
|
|
|
|
| LowMAPQ |
416636404 |
35.32 % |
62912097004 |
39.84 % |
| MateUnmapped |
14288691 |
1.21 % |
2157592341 |
1.37 % |
| Duplicate |
141082995 |
11.96 % |
21303532245 |
13.49 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
120716 |
0.01 % |
18228116 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30656284 |
2.60 % |
4629098884 |
2.93 % |
| Unmapped |
14288691 |
1.21 % |
2157592341 |
1.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86962657942 |
100% |
| Passed |
63125453022 |
72.59 % |
| Trimmed |
2377248534 |
2.73 % |
| Clipped |
942007441 |
1.08 % |
| Overlapping |
19116632993 |
21.98 % |
| LowQuality |
1401315952 |
1.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |