/EXTERNAL KNIH/methylation/K006240_1_lane_gembs

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SAMPLE K006240_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26657710 21561473 80.88 %
NonRefCpG 376241 167316 44.47 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006240_1_lane_gembs_coverage_refCpG.png ./IMG//K006240_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006240_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006240_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006240_1_lane_gembs_quality_refcpg.png ./IMG//K006240_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006240_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5095333 9.93 % 4010815 8.90 % 142192 21.24 % 31659 7.81 %
Intermediate (0.3-0.7) 7998909 15.59 % 6071975 13.48 % 143724 21.46 % 68047 16.79 %
Methylated (0.7-1) 38210804 74.48 % 34959411 77.61 % 383682 57.30 % 305468 75.39 %
Median Methylation 0.850 0.860 0.760 0.850