/EXTERNAL KNIH/K006241_1_lane_gembs

BACK

SAMPLE K006241_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1375815542 100.00 % 687907771 100.00 % 687907771 100.00 %
General Reads 1340263185 97.42 % 675783262 98.24 % 664479923 96.59 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7130134 0.52 % 3602012 0.52 % 3528122 0.51 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28422223 2.07 % 8522497 1.24 % 19899726 2.89 %
Bisulfite_reads C2T 685053364 49.79 % 345365775 50.21 % 339687589 49.38 %
Bisulfite_reads G2A 662339955 48.14 % 334019499 48.56 % 328320456 47.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 393165189
Average Unique 57.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73720813673 35.25 % 28792649790 27.54 % 44928163883 42.97 %
Base Counts Overall C 29554406759 14.13 % 4725196392 4.52 % 24829210367 23.75 %
Base Counts Overall G 32292269130 15.44 % 25751375564 24.63 % 6540893566 6.26 %
Base Counts Overall T 72145408347 34.50 % 44589942253 42.64 % 27555466094 26.35 %
Base Counts Overall N 1411064475 0.67 % 702817193 0.67 % 708247282 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9639905731570015
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 453658327



Mapping Quality

Mapping Quality Histogram
K006241_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006241_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20150002.Bisulfite-Seq.DNA_Methylation.EGAX00001529773.IPS02_N