/EXTERNAL KNIH/K006241_1_lane_gembs/KEP20150002.Bisulfite-Seq.DNA_Methylation.EGAX00001529773.IPS02_N

BACK

SAMPLE K006241_1_lane_gembs LANE KEP20150002.Bisulfite-Seq.DNA_Methylation.EGAX00001529773.IPS02_N

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1375815542	100.00 %	687907771	100.00 %	687907771	100.00 %
General Reads	1340263185	97.42 %	675783262	98.24 %	664479923	96.59 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	7130134	0.52 %	3602012	0.52 %	3528122	0.51 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	28422223	2.07 %	8522497	1.24 %	19899726	2.89 %
Bisulfite_reads C2T	685053364	49.79 %	345365775	50.21 %	339687589	49.38 %
Bisulfite_reads G2A	662339955	48.14 %	334019499	48.56 %	328320456	47.73 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	393165189
Average Unique	57.15 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	73720813673	35.25 %	28792649790	27.54 %	44928163883	42.97 %
Base Counts Overall C	29554406759	14.13 %	4725196392	4.52 %	24829210367	23.75 %
Base Counts Overall G	32292269130	15.44 %	25751375564	24.63 %	6540893566	6.26 %
Base Counts Overall T	72145408347	34.50 %	44589942253	42.64 %	27555466094	26.35 %
Base Counts Overall N	1411064475	0.67 %	702817193	0.67 %	708247282	0.68 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9639905731570015
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	453658327

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
151	687907771
151	687907771

Insert Size Plot

Insert Size Histogram