/EXTERNAL KNIH/mapping_coverage/K006241_1_lane_gembs
BACK
SAMPLE K006241_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1214644840 |
100% |
163597024950 |
100% |
| Mapped |
1196521967 |
98.51 % |
160860471127 |
98.33 % |
| Passed |
526413381 |
43.34 % |
59674074641 |
36.48 % |
| NotPassed |
670108586 |
55.17 % |
101186396486 |
61.85 % |
| |
|
|
|
|
| LowMAPQ |
503367338 |
41.44 % |
76008468038 |
46.46 % |
| MateUnmapped |
18122873 |
1.49 % |
2736553823 |
1.67 % |
| Duplicate |
131980728 |
10.87 % |
19929089928 |
12.18 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
152478 |
0.01 % |
23024178 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
34608042 |
2.85 % |
5225814342 |
3.19 % |
| Unmapped |
18122873 |
1.49 % |
2736553823 |
1.67 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79312540714 |
100% |
| Passed |
54746278771 |
69.03 % |
| Trimmed |
2090798310 |
2.64 % |
| Clipped |
1106826050 |
1.40 % |
| Overlapping |
18531640023 |
23.37 % |
| LowQuality |
2836997560 |
3.58 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |