/EXTERNAL KNIH/methylation/K006241_1_lane_gembs

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SAMPLE K006241_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26625077 21192025 79.59 %
NonRefCpG 407775 163046 39.98 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006241_1_lane_gembs_coverage_refCpG.png ./IMG//K006241_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006241_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006241_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006241_1_lane_gembs_quality_refcpg.png ./IMG//K006241_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006241_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4987866 9.85 % 3933218 8.98 % 164660 23.23 % 33027 8.35 %
Intermediate (0.3-0.7) 6519444 12.87 % 4569477 10.43 % 146258 20.63 % 56914 14.39 %
Methylated (0.7-1) 39149219 77.28 % 35301429 80.59 % 398019 56.14 % 305683 77.27 %
Median Methylation 0.880 0.890 0.760 0.880