/EXTERNAL KNIH/mapping_coverage/K006244_1_lane_gembs
BACK
SAMPLE K006244_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1170406005 |
100% |
157788818853 |
100% |
| Mapped |
1154407968 |
98.63 % |
155373115266 |
98.47 % |
| Passed |
519914783 |
44.42 % |
59564644331 |
37.75 % |
| NotPassed |
634493185 |
54.21 % |
95808470935 |
60.72 % |
| |
|
|
|
|
| LowMAPQ |
465153134 |
39.74 % |
70238123234 |
44.51 % |
| MateUnmapped |
15998037 |
1.37 % |
2415703587 |
1.53 % |
| Duplicate |
135715898 |
11.60 % |
20493100598 |
12.99 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
137648 |
0.01 % |
20784848 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
33486505 |
2.86 % |
5056462255 |
3.20 % |
| Unmapped |
15998037 |
1.37 % |
2415703587 |
1.53 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78342374774 |
100% |
| Passed |
54444414567 |
69.50 % |
| Trimmed |
2081729360 |
2.66 % |
| Clipped |
1010176676 |
1.29 % |
| Overlapping |
17767553767 |
22.68 % |
| LowQuality |
3038500404 |
3.88 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |