/EXTERNAL KNIH/methylation/K006244_1_lane_gembs

BACK

SAMPLE K006244_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26522592 20986503 79.13 %
NonRefCpG 345357 103216 29.89 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006244_1_lane_gembs_coverage_refCpG.png ./IMG//K006244_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006244_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006244_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006244_1_lane_gembs_quality_refcpg.png ./IMG//K006244_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006244_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4930689 9.79 % 3882753 8.95 % 165074 28.09 % 30623 11.00 %
Intermediate (0.3-0.7) 6650921 13.20 % 4643885 10.70 % 136946 23.31 % 47343 17.00 %
Methylated (0.7-1) 38801486 77.01 % 34879681 80.36 % 285594 48.60 % 200493 72.00 %
Median Methylation 0.880 0.890 0.680 0.860