/EXTERNAL KNIH/K006245_1_lane_gembs

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SAMPLE K006245_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1428138972 100.00 % 714069486 100.00 % 714069486 100.00 %
General Reads 1372113783 96.08 % 690387828 96.68 % 681725955 95.47 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8963006 0.63 % 4517633 0.63 % 4445373 0.62 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 47062183 3.30 % 19164025 2.68 % 27898158 3.91 %
Bisulfite_reads C2T 695990396 48.73 % 350064416 49.02 % 345925980 48.44 %
Bisulfite_reads G2A 685086393 47.97 % 344841045 48.29 % 340245348 47.65 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 293943584
Average Unique 41.16 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74466308160 34.30 % 29884336616 27.53 % 44581971544 41.07 %
Base Counts Overall C 33115991959 15.26 % 7946811236 7.32 % 25169180723 23.19 %
Base Counts Overall G 37050409636 17.07 % 26888541959 24.77 % 10161867677 9.36 %
Base Counts Overall T 70964363860 32.69 % 43086005710 39.70 % 27878358150 25.69 %
Base Counts Overall N 1480050129 0.68 % 732866351 0.68 % 747183778 0.69 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9415896317232841
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 350133077



Mapping Quality

Mapping Quality Histogram
K006245_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006245_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20150006.Bisulfite-Seq.DNA_Methylation.EGAX00001529777.IPS06_X