/EXTERNAL KNIH/mapping_coverage/K006245_1_lane_gembs
BACK
SAMPLE K006245_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1261591387 |
100% |
175547860463 |
100% |
| Mapped |
1237754392 |
98.11 % |
171948474218 |
97.95 % |
| Passed |
339112571 |
26.88 % |
36253559247 |
20.65 % |
| NotPassed |
898641821 |
71.23 % |
135694914971 |
77.30 % |
| |
|
|
|
|
| LowMAPQ |
723332222 |
57.33 % |
109223165522 |
62.22 % |
| MateUnmapped |
23836995 |
1.89 % |
3599386245 |
2.05 % |
| Duplicate |
136047329 |
10.78 % |
20543146679 |
11.70 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
350422 |
0.03 % |
52913722 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38911848 |
3.08 % |
5875689048 |
3.35 % |
| Unmapped |
23836995 |
1.89 % |
3599386245 |
2.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
50773147057 |
100% |
| Passed |
34245017995 |
67.45 % |
| Trimmed |
1326654234 |
2.61 % |
| Clipped |
1733777016 |
3.41 % |
| Overlapping |
12785810794 |
25.18 % |
| LowQuality |
681887018 |
1.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |