/EXTERNAL KNIH/methylation/K006245_1_lane_gembs

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SAMPLE K006245_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26106474 16857855 64.57 %
NonRefCpG 459426 125130 27.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006245_1_lane_gembs_coverage_refCpG.png ./IMG//K006245_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006245_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006245_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006245_1_lane_gembs_quality_refcpg.png ./IMG//K006245_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006245_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4734330 9.86 % 2596031 7.31 % 211906 27.26 % 31505 9.72 %
Intermediate (0.3-0.7) 8377798 17.44 % 4766279 13.43 % 190520 24.51 % 56263 17.35 %
Methylated (0.7-1) 34924951 72.70 % 28129847 79.26 % 374904 48.23 % 236440 72.93 %
Median Methylation 0.850 0.880 0.670 0.860