/EXTERNAL CREST/mapping_coverage/K006463_1_lane_gembs
BACK
SAMPLE K006463_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1677239165 |
100% |
119458568168 |
100% |
| Mapped |
1677239165 |
100.00 % |
119458568168 |
100.00 % |
| Passed |
918920652 |
54.79 % |
93458416868 |
78.24 % |
| NotPassed |
758318513 |
45.21 % |
26000151300 |
21.76 % |
| |
|
|
|
|
| LowMAPQ |
260001513 |
15.50 % |
26000151300 |
21.76 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
498317000 |
29.71 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
46086467500 |
100% |
| Passed |
41649622306 |
90.37 % |
| Trimmed |
2035660960 |
4.42 % |
| Clipped |
1963435524 |
4.26 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
437748710 |
0.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |