/EXTERNAL CREST/methylation/K006463_1_lane_gembs

BACK

SAMPLE K006463_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25341447 15768704 62.22 %
NonRefCpG 341453 90960 26.64 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006463_1_lane_gembs_coverage_refCpG.png ./IMG//K006463_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006463_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006463_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006463_1_lane_gembs_quality_refcpg.png ./IMG//K006463_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006463_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7496961 15.27 % 5167001 14.40 % 175024 28.59 % 32876 12.52 %
Intermediate (0.3-0.7) 11491963 23.41 % 7096618 19.77 % 165057 26.96 % 59852 22.80 %
Methylated (0.7-1) 30110845 61.33 % 23626035 65.83 % 272101 44.45 % 169759 64.67 %
Median Methylation 0.780 0.810 0.630 0.800