/EXTERNAL KNIH/methylation/K006246_1_lane_gembs

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SAMPLE K006246_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24966752 10019308 40.13 %
NonRefCpG 491456 66867 13.61 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006246_1_lane_gembs_coverage_refCpG.png ./IMG//K006246_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006246_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006246_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006246_1_lane_gembs_quality_refcpg.png ./IMG//K006246_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006246_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9773063 22.64 % 4674669 19.07 % 257370 33.48 % 42854 19.44 %
Intermediate (0.3-0.7) 13247418 30.69 % 5933168 24.20 % 252014 32.78 % 63146 28.65 %
Methylated (0.7-1) 20150576 46.68 % 13906680 56.73 % 259409 33.74 % 114387 51.90 %
Median Methylation 0.660 0.760 0.510 0.710