/EXTERNAL KNIH/K006247_1_lane_gembs

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SAMPLE K006247_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1261161766 100.00 % 630580883 100.00 % 630580883 100.00 %
General Reads 1223746964 97.03 % 619073262 98.18 % 604673702 95.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1380203 0.11 % 700237 0.11 % 679966 0.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36034599 2.86 % 10807384 1.71 % 25227215 4.00 %
Bisulfite_reads C2T 618705335 49.06 % 312826837 49.61 % 305878498 48.51 %
Bisulfite_reads G2A 606421832 48.08 % 306946662 48.68 % 299475170 47.49 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 311223251
Average Unique 49.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 66397047445 34.64 % 26326632447 27.47 % 40070414998 41.81 %
Base Counts Overall C 28450768028 14.84 % 4731875012 4.94 % 23718893016 24.75 %
Base Counts Overall G 31055645018 16.20 % 24458763825 25.52 % 6596881193 6.88 %
Base Counts Overall T 64512881492 33.65 % 39691928267 41.41 % 24820953225 25.90 %
Base Counts Overall N 1280246449 0.67 % 639094665 0.67 % 641151784 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9648387202647764
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 362443574



Mapping Quality

Mapping Quality Histogram
K006247_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006247_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573564.SMC02_WGBS