/EXTERNAL KNIH/K006247_1_lane_gembs/KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573564.SMC02_WGBS

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SAMPLE K006247_1_lane_gembs LANE KEP20160002.Bisulfite-Seq.DNA_Methylation.EGAX00001573564.SMC02_WGBS

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1261161766	100.00 %	630580883	100.00 %	630580883	100.00 %
General Reads	1223746964	97.03 %	619073262	98.18 %	604673702	95.89 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1380203	0.11 %	700237	0.11 %	679966	0.11 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	36034599	2.86 %	10807384	1.71 %	25227215	4.00 %
Bisulfite_reads C2T	618705335	49.06 %	312826837	49.61 %	305878498	48.51 %
Bisulfite_reads G2A	606421832	48.08 %	306946662	48.68 %	299475170	47.49 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	311223251
Average Unique	49.36 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	66397047445	34.64 %	26326632447	27.47 %	40070414998	41.81 %
Base Counts Overall C	28450768028	14.84 %	4731875012	4.94 %	23718893016	24.75 %
Base Counts Overall G	31055645018	16.20 %	24458763825	25.52 %	6596881193	6.88 %
Base Counts Overall T	64512881492	33.65 %	39691928267	41.41 %	24820953225	25.90 %
Base Counts Overall N	1280246449	0.67 %	639094665	0.67 %	641151784	0.67 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9648387202647764
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	362443574

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
151	630580883
151	630580883

Insert Size Plot

Insert Size Histogram