/EXTERNAL KNIH/mapping_coverage/K006247_1_lane_gembs
BACK
SAMPLE K006247_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1065258093 |
100% |
149572677605 |
100% |
| Mapped |
1043009421 |
97.91 % |
146213128133 |
97.75 % |
| Passed |
293930758 |
27.59 % |
33102250020 |
22.13 % |
| NotPassed |
749078663 |
70.32 % |
113110878113 |
75.62 % |
| |
|
|
|
|
| LowMAPQ |
542352984 |
50.91 % |
81895300584 |
54.75 % |
| MateUnmapped |
22248672 |
2.09 % |
3359549472 |
2.25 % |
| Duplicate |
170608491 |
16.02 % |
25761882141 |
17.22 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
333520 |
0.03 % |
50361520 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35783668 |
3.36 % |
5403333868 |
3.61 % |
| Unmapped |
22248672 |
2.09 % |
3359549472 |
2.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
44068603909 |
100% |
| Passed |
30621053569 |
69.48 % |
| Trimmed |
1145154247 |
2.60 % |
| Clipped |
972924213 |
2.21 % |
| Overlapping |
9993429676 |
22.68 % |
| LowQuality |
1336042204 |
3.03 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |