/EXTERNAL KNIH/methylation/K006247_1_lane_gembs

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SAMPLE K006247_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25610868 11397687 44.50 %
NonRefCpG 483533 79083 16.36 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006247_1_lane_gembs_coverage_refCpG.png ./IMG//K006247_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006247_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006247_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006247_1_lane_gembs_quality_refcpg.png ./IMG//K006247_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006247_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9636778 21.25 % 4846955 17.66 % 257393 32.96 % 46167 18.28 %
Intermediate (0.3-0.7) 13571789 29.93 % 6559424 23.90 % 250903 32.13 % 71037 28.13 %
Methylated (0.7-1) 22141892 48.82 % 16043434 58.45 % 272608 34.91 % 135294 53.58 %
Median Methylation 0.680 0.770 0.520 0.730