/EXTERNAL KNIH/K006248_1_lane_gembs/KEP20160003.Bisulfite-Seq.DNA_Methylation.EGAX00001574578.SMC03_WGBS

BACK

SAMPLE K006248_1_lane_gembs LANE KEP20160003.Bisulfite-Seq.DNA_Methylation.EGAX00001574578.SMC03_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1106474354 100.00 % 553237177 100.00 % 553237177 100.00 %
General Reads 1032781460 93.34 % 533174848 96.37 % 499606612 90.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11910056 1.08 % 6152711 1.11 % 5757345 1.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 61782838 5.58 % 13909618 2.51 % 47873220 8.65 %
Bisulfite_reads C2T 528128110 47.73 % 272481485 49.25 % 255646625 46.21 %
Bisulfite_reads G2A 516563406 46.69 % 266846074 48.23 % 249717332 45.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 205381172
Average Unique 37.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 58135259032 34.57 % 23307195657 27.72 % 34828063375 41.42 %
Base Counts Overall C 24929418831 14.82 % 5340143393 6.35 % 19589275438 23.30 %
Base Counts Overall G 28496182973 16.94 % 20701662400 24.62 % 7794520573 9.27 %
Base Counts Overall T 55489825980 32.99 % 34178819564 40.64 % 21311006416 25.34 %
Base Counts Overall N 1133414992 0.67 % 564229890 0.67 % 569185102 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9303881696044022
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 243202139



Mapping Quality

Mapping Quality Histogram
KEP20160003.Bisulfite-Seq.DNA_Methylation.EGAX00001574578.SMC03_WGBS.mapq.png



Read Length

Read Length Reads
151 553237177
151 553237177



Insert Size Plot

Insert Size Histogram
KEP20160003.Bisulfite-Seq.DNA_Methylation.EGAX00001574578.SMC03_WGBS.isize.png