/EXTERNAL KNIH/mapping_coverage/K006248_1_lane_gembs
BACK
SAMPLE K006248_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
969301661 |
100% |
133707822660 |
100% |
| Mapped |
926627484 |
95.60 % |
127264021933 |
95.18 % |
| Passed |
269974520 |
27.85 % |
28109424369 |
21.02 % |
| NotPassed |
656652964 |
67.74 % |
99154597564 |
74.16 % |
| |
|
|
|
|
| LowMAPQ |
533646796 |
55.05 % |
80580666196 |
60.27 % |
| MateUnmapped |
42674177 |
4.40 % |
6443800727 |
4.82 % |
| Duplicate |
73157815 |
7.55 % |
11046830065 |
8.26 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
220640 |
0.02 % |
33316640 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
49627713 |
5.12 % |
7493784663 |
5.60 % |
| Unmapped |
42674177 |
4.40 % |
6443800727 |
4.82 % |
Base Level Counts
| Bases |
# |
% |
| Total |
40538877588 |
100% |
| Passed |
25328290240 |
62.48 % |
| Trimmed |
999126602 |
2.46 % |
| Clipped |
1234263651 |
3.04 % |
| Overlapping |
11195189568 |
27.62 % |
| LowQuality |
1782007527 |
4.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |