/EXTERNAL KNIH/methylation/K006248_1_lane_gembs

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SAMPLE K006248_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25511810 7737803 30.33 %
NonRefCpG 752369 51378 6.83 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006248_1_lane_gembs_coverage_refCpG.png ./IMG//K006248_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006248_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006248_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006248_1_lane_gembs_quality_refcpg.png ./IMG//K006248_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006248_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10310092 22.49 % 3527520 16.20 % 579767 45.74 % 72613 27.92 %
Intermediate (0.3-0.7) 15320805 33.42 % 5836447 26.80 % 399518 31.52 % 82234 31.62 %
Methylated (0.7-1) 20213288 44.09 % 12416980 57.01 % 288204 22.74 % 105214 40.46 %
Median Methylation 0.640 0.750 0.350 0.590