/EXTERNAL KNIH/K006249_1_lane_gembs/KEP20160004.Bisulfite-Seq.DNA_Methylation.EGAX00001574579.SMC04_WGBS

BACK

SAMPLE K006249_1_lane_gembs LANE KEP20160004.Bisulfite-Seq.DNA_Methylation.EGAX00001574579.SMC04_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1080537950 100.00 % 540268975 100.00 % 540268975 100.00 %
General Reads 1028099384 95.15 % 525827093 97.33 % 502272291 92.97 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7809630 0.72 % 4004519 0.74 % 3805111 0.70 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 44628936 4.13 % 10437363 1.93 % 34191573 6.33 %
Bisulfite_reads C2T 523145951 48.42 % 267377630 49.49 % 255768321 47.34 %
Bisulfite_reads G2A 512763063 47.45 % 262453982 48.58 % 250309081 46.33 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 238557537
Average Unique 44.16 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57242987921 34.85 % 22633119404 27.56 % 34609868517 42.15 %
Base Counts Overall C 23691097549 14.42 % 4210373900 5.13 % 19480723649 23.72 %
Base Counts Overall G 26859222749 16.35 % 20377566178 24.81 % 6481656571 7.89 %
Base Counts Overall T 55344037472 33.70 % 34349406228 41.83 % 20994631244 25.57 %
Base Counts Overall N 1104422709 0.67 % 550418490 0.67 % 554004219 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9474366092640909
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 278532507



Mapping Quality

Mapping Quality Histogram
KEP20160004.Bisulfite-Seq.DNA_Methylation.EGAX00001574579.SMC04_WGBS.mapq.png



Read Length

Read Length Reads
151 540268975
151 540268975



Insert Size Plot

Insert Size Histogram
KEP20160004.Bisulfite-Seq.DNA_Methylation.EGAX00001574579.SMC04_WGBS.isize.png