/EXTERNAL KNIH/mapping_coverage/K006249_1_lane_gembs
BACK
SAMPLE K006249_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
950426228 |
100% |
129570143185 |
100% |
| Mapped |
919122214 |
96.71 % |
124843237071 |
96.35 % |
| Passed |
312229467 |
32.85 % |
33202432274 |
25.63 % |
| NotPassed |
606892747 |
63.85 % |
91640804797 |
70.73 % |
| |
|
|
|
|
| LowMAPQ |
480660702 |
50.57 % |
72579766002 |
56.02 % |
| MateUnmapped |
31304014 |
3.29 % |
4726906114 |
3.65 % |
| Duplicate |
84456801 |
8.89 % |
12752976951 |
9.84 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
143172 |
0.02 % |
21618972 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41632072 |
4.38 % |
6286442872 |
4.85 % |
| Unmapped |
31304014 |
3.29 % |
4726906114 |
3.65 % |
Base Level Counts
| Bases |
# |
% |
| Total |
46972419375 |
100% |
| Passed |
29851593454 |
63.55 % |
| Trimmed |
1167177267 |
2.48 % |
| Clipped |
1132043263 |
2.41 % |
| Overlapping |
12637943838 |
26.91 % |
| LowQuality |
2183661553 |
4.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |